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Website Title
fMRIPrep: A Robust Preprocessing Pipeline for fMRI Data — fmriprep version documentation
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In-page links
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Anchor | Type | Juice |
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fmriprep | Internal | Passing Juice |
Installation | Internal | Passing Juice |
Usage Notes | Internal | Passing Juice |
Processing pipeline details | Internal | Passing Juice |
Defining standard and nonstandard spaces where data will be resampled | Internal | Passing Juice |
FAQ - Frequently Asked Questions | Internal | Passing Juice |
Developers - API | Internal | Passing Juice |
What’s new | Internal | Passing Juice |
Edit on GitHub | External | Passing Juice |
| Internal | Passing Juice |
www.nipreps.org | External | Passing Juice |
| Internal | Passing Juice |
workflows section of our documentation | External | Passing Juice |
FSL | External | Passing Juice |
ANTs | External | Passing Juice |
FreeSurfer | External | Passing Juice |
AFNI | External | Passing Juice |
https://fmriprep.readthedocs.io/ | External | Passing Juice |
| Internal | Passing Juice |
| Internal | Passing Juice |
NiPreps documentation | External | Passing Juice |
CC0 license | External | Passing Juice |
Esteban et al. (2019) | External | Passing Juice |
preprint | External | Passing Juice |
Esteban et al. (2020) | External | Passing Juice |
preprint | External | Passing Juice |
OHBM 2018 software demonstration | External | Passing Juice |
Abstract | External | Passing Juice |
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Abstract | External | Passing Juice |
External | Passing Juice | |
| Internal | Passing Juice |
general licensing guidelines | External | Passing Juice |
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http://www.apache.org/licenses/LICENSE-2.0 | External | Passing Juice |
| Internal | Passing Juice |
| Internal | Passing Juice |
Containerized execution (Docker and Singularity) | Internal | Passing Juice |
Manually Prepared Environment (Python 3.8+) | Internal | Passing Juice |
External Dependencies | Internal | Passing Juice |
Not running on a local machine? - Data transfer | Internal | Passing Juice |
Execution and the BIDS format | Internal | Passing Juice |
Command-Line Arguments | Internal | Passing Juice |
Positional Arguments | Internal | Passing Juice |
Options for filtering BIDS queries | Internal | Passing Juice |
Options to handle performance | Internal | Passing Juice |
Options for performing only a subset of the workflow | Internal | Passing Juice |
Workflow configuration | Internal | Passing Juice |
Options for modulating outputs | Internal | Passing Juice |
[DEPRECATED] Options for running ICA_AROMA | Internal | Passing Juice |
Options relating to confounds | Internal | Passing Juice |
Specific options for ANTs registrations | Internal | Passing Juice |
Specific options for handling fieldmaps | Internal | Passing Juice |
Specific options for SyN distortion correction | Internal | Passing Juice |
Specific options for FreeSurfer preprocessing | Internal | Passing Juice |
Options for carbon usage tracking | Internal | Passing Juice |
Other options | Internal | Passing Juice |
The command-line interface of the docker wrapper | Internal | Passing Juice |
The FreeSurfer license | Internal | Passing Juice |
Reusing precomputed derivatives | Internal | Passing Juice |
Troubleshooting | Internal | Passing Juice |
License information | Internal | Passing Juice |
Preprocessing of structural MRI | Internal | Passing Juice |
Brain extraction, brain tissue segmentation and spatial normalization | Internal | Passing Juice |
Cost function masking during spatial normalization | Internal | Passing Juice |
Longitudinal processing | Internal | Passing Juice |
Surface preprocessing | Internal | Passing Juice |
Refinement of the brain mask | Internal | Passing Juice |
BOLD preprocessing | Internal | Passing Juice |
BOLD reference image estimation | Internal | Passing Juice |
Head-motion estimation | Internal | Passing Juice |
Slice time correction | Internal | Passing Juice |
Susceptibility Distortion Correction (SDC) | Internal | Passing Juice |
Pre-processed BOLD in native space | Internal | Passing Juice |
EPI to T1w registration | Internal | Passing Juice |
Resampling BOLD runs onto standard spaces | Internal | Passing Juice |
EPI sampled to FreeSurfer surfaces | Internal | Passing Juice |
HCP Grayordinates | Internal | Passing Juice |
Confounds estimation | Internal | Passing Juice |
T2*-driven echo combination | Internal | Passing Juice |
References | Internal | Passing Juice |
Layout | Internal | Passing Juice |
Visual Reports | Internal | Passing Juice |
Anatomical derivatives | Internal | Passing Juice |
FreeSurfer derivatives | Internal | Passing Juice |
Functional derivatives | Internal | Passing Juice |
Confounds | Internal | Passing Juice |
Confound regressors description | Internal | Passing Juice |
Confounds and “carpet”-plot on the visual reports | Internal | Passing Juice |
Legacy layout | Internal | Passing Juice |
Standard spaces | Internal | Passing Juice |
Custom standard spaces | Internal | Passing Juice |
Nonstandard spaces | Internal | Passing Juice |
Preprocessing blocks depending on standard templates | Internal | Passing Juice |
What if I find some images have undergone some pre-processing already (e.g., my T1w image is already skull-stripped)? | Internal | Passing Juice |
Running subjects in parallel | Internal | Passing Juice |
Setting up your development environment | Internal | Passing Juice |
Internal configuration system | Internal | Passing Juice |
Configuration sections | Internal | Passing Juice |
Usage | Internal | Passing Juice |
Logging | Internal | Passing Juice |
Other responsibilities | Internal | Passing Juice |
Workflows | Internal | Passing Juice |
fMRIPrep base processing workflows | Internal | Passing Juice |
Pre-processing fMRI - BOLD signal workflows | Internal | Passing Juice |
23.1.3 (June 24, 2023) | Internal | Passing Juice |
23.1.2 (June 16, 2023) | Internal | Passing Juice |
23.1.1 (June 14, 2023) | Internal | Passing Juice |
23.1.0 (June 12, 2023) | Internal | Passing Juice |
23.0.2 (April 24, 2023) | Internal | Passing Juice |
23.0.1 (March 24, 2023) | Internal | Passing Juice |
23.0.0 (March 13, 2023) | Internal | Passing Juice |
22.1.1 (January 04, 2023) | Internal | Passing Juice |
22.1.0 (December 12, 2022) | Internal | Passing Juice |
22.0.2 (September 27, 2022) | Internal | Passing Juice |
22.0.1 (September 13, 2022) | Internal | Passing Juice |
22.0.0 (July 28, 2022) | Internal | Passing Juice |
21.0.4 (September 29, 2022) | Internal | Passing Juice |
21.0.3 (September 6, 2022) | Internal | Passing Juice |
21.0.2 (April 21, 2022) | Internal | Passing Juice |
21.0.1 (January 24, 2022) | Internal | Passing Juice |
21.0.0 (December 14, 2021) | Internal | Passing Juice |
20.2.7 (January 24, 2022) | Internal | Passing Juice |
20.2.6 (October 27, 2021) | Internal | Passing Juice |
20.2.5 (October 12, 2021) | Internal | Passing Juice |
20.2.4 (October 04, 2021) | Internal | Passing Juice |
20.2.3 (July 21, 2021) | Internal | Passing Juice |
20.2.2 (July 16, 2021) | Internal | Passing Juice |
20.2.1 (November 06, 2020) | Internal | Passing Juice |
20.2.0 (September 28, 2020) | Internal | Passing Juice |
20.1.4 (July 16, 2021) | Internal | Passing Juice |
20.1.3 (September 15, 2020) | Internal | Passing Juice |
20.1.2 (September 04, 2020) | Internal | Passing Juice |
20.1.1 (June 04, 2020) | Internal | Passing Juice |
20.1.0 (May 27, 2020) | Internal | Passing Juice |
20.0.x series (February 2020) | Internal | Passing Juice |
20.0.7 (May 5, 2020) | Internal | Passing Juice |
20.0.6 (April 16, 2020) | Internal | Passing Juice |
20.0.5 (March 19, 2020) | Internal | Passing Juice |
20.0.4 (March 17, 2020) | Internal | Passing Juice |
20.0.3 (March 12, 2020) | Internal | Passing Juice |
20.0.2 (March 6, 2020) | Internal | Passing Juice |
20.0.1 (February 27, 2020) | Internal | Passing Juice |
20.0.0 (February 24, 2020) | Internal | Passing Juice |
1.5.x series (September 2019) | Internal | Passing Juice |
1.5.10 (April 16, 2020) | Internal | Passing Juice |
1.5.9 (February 14, 2020) | Internal | Passing Juice |
1.5.8 (January 28, 2020) | Internal | Passing Juice |
1.5.7 (January 23, 2020) | Internal | Passing Juice |
1.5.6 (January 22, 2020) | Internal | Passing Juice |
1.5.5 (January 14, 2020) | Internal | Passing Juice |
1.5.4 (December 18, 2019) | Internal | Passing Juice |
1.5.3 (December 12, 2019) | Internal | Passing Juice |
1.5.2 (December 2, 2019) | Internal | Passing Juice |
1.5.1 (November 26, 2019) | Internal | Passing Juice |
1.5.0 (September 9, 2019) | Internal | Passing Juice |
1.4.x series (May 2019) | Internal | Passing Juice |
1.4.1 (July 9, 2019) | Internal | Passing Juice |
1.4.0 (May 15, 2019) | Internal | Passing Juice |
1.3.x series (March 2019) | Internal | Passing Juice |
1.3.2 (March 18, 2019) | Internal | Passing Juice |
1.3.1.post2 (March 13, 2019) | Internal | Passing Juice |
1.3.1.post1 (March 11, 2019) | Internal | Passing Juice |
1.3.1 (March 6, 2019) | Internal | Passing Juice |
1.3.0.post3 (March 1, 2019) | Internal | Passing Juice |
1.3.0.post2 (February 14, 2019) | Internal | Passing Juice |
1.3.0.post1 (February 8, 2019) | Internal | Passing Juice |
1.3.0 (February 7, 2019) | Internal | Passing Juice |
1.2.x series (January 2019) | Internal | Passing Juice |
1.2.6-1 (January 24, 2019) | Internal | Passing Juice |
1.2.6 (January 17, 2019) | Internal | Passing Juice |
1.2.5 (December 4, 2018) | Internal | Passing Juice |
1.2.4 (December 3, 2018) | Internal | Passing Juice |
1.2.3 (November 16, 2018) | Internal | Passing Juice |
1.2.2 (November 9, 2018) | Internal | Passing Juice |
1.2.1 (November 1, 2018) | Internal | Passing Juice |
1.2.0 (October 31, 2018) | Internal | Passing Juice |
1.1.x series (October 2018) | Internal | Passing Juice |
1.1.8 (October 4, 2018) | Internal | Passing Juice |
1.1.7 (September 25, 2018) | Internal | Passing Juice |
1.1.6 (September 10, 2018) | Internal | Passing Juice |
1.1.5 (September 06, 2018) | Internal | Passing Juice |
1.1.4 (August 06, 2018) | Internal | Passing Juice |
1.1.3 (July 30, 2018) | Internal | Passing Juice |
1.1.2 (July 6, 2018) | Internal | Passing Juice |
1.1.1 (June 7, 2018) | Internal | Passing Juice |
1.1.0 (June 4, 2018) | Internal | Passing Juice |
1.0.x series (May 2018) | Internal | Passing Juice |
1.0.15 (May 17, 2018) | Internal | Passing Juice |
1.0.14 (May 15, 2018) | Internal | Passing Juice |
1.0.13 (May 11, 2018) | Internal | Passing Juice |
1.0.12 (May 03, 2018) | Internal | Passing Juice |
1.0.11 (April 16, 2018) | Internal | Passing Juice |
1.0.10 (April 16, 2018) | Internal | Passing Juice |
1.0.9 (April 10, 2018) | Internal | Passing Juice |
1.0.8 (February 22, 2018) | Internal | Passing Juice |
1.0.7 (February 13, 2018) | Internal | Passing Juice |
1.0.6 (29th of January 2018) | Internal | Passing Juice |
1.0.5 (21st of January 2018) | Internal | Passing Juice |
1.0.4 (15th of January 2018) | Internal | Passing Juice |
1.0.3 (3rd of January 2018) | Internal | Passing Juice |
1.0.2 (2nd of January 2018) | Internal | Passing Juice |
1.0.1 (1st of January 2018) | Internal | Passing Juice |
1.0.0 (6th of December 2017) | Internal | Passing Juice |
1.0.0-rc13 (1st of December 2017) | Internal | Passing Juice |
1.0.0-rc12 (29th of November 2017) | Internal | Passing Juice |
1.0.0-rc11 (24th of November 2017) | Internal | Passing Juice |
1.0.0-rc10 (9th of November 2017) | Internal | Passing Juice |
1.0.0-rc9 (2nd of November 2017) | Internal | Passing Juice |
1.0.0-rc8 (27th of October 2017) | Internal | Passing Juice |
1.0.0-rc7 (20th of October 2017) | Internal | Passing Juice |
1.0.0-rc6 (11th of October 2017) | Internal | Passing Juice |
1.0.0-rc5 (25th of September 2017) | Internal | Passing Juice |
1.0.0-rc4 (12th of September 2017) | Internal | Passing Juice |
1.0.0-rc3 (28th of August 2017) | Internal | Passing Juice |
1.0.0-rc2 (12th of August 2017) | Internal | Passing Juice |
1.0.0-rc1 (8th of August 2017) | Internal | Passing Juice |
0.x series (July 2017) | Internal | Passing Juice |
0.6.0 (31st of July 2017) | Internal | Passing Juice |
0.5.4 (20th of July 2017) | Internal | Passing Juice |
0.5.3 (18th of July 2017) | Internal | Passing Juice |
0.5.2 (30th of June 2017) | Internal | Passing Juice |
0.5.1 (24th of June 2017) | Internal | Passing Juice |
0.5.0 (21st of June 2017) | Internal | Passing Juice |
0.4.6 (14th of June 2017) | Internal | Passing Juice |
0.4.5 (12th of June 2017) | Internal | Passing Juice |
0.4.4 (20th of May 2017) | Internal | Passing Juice |
0.4.3 (10th of May 2017) | Internal | Passing Juice |
0.4.2 (3rd of May 2017) | Internal | Passing Juice |
0.4.1 (20th of April 2017) | Internal | Passing Juice |
0.4.0 (20th of April 2017) | Internal | Passing Juice |
0.3.2 (7th of April 2017) | Internal | Passing Juice |
0.3.1 (24th of March 2017) | Internal | Passing Juice |
0.3.0 (20th of March 2017) | Internal | Passing Juice |
0.2.0 (13th of January 2017) | Internal | Passing Juice |
0.1.2 (3rd of October 2016) | Internal | Passing Juice |
0.1.1 (30th of July 2016) | Internal | Passing Juice |
0.0.1 | Internal | Passing Juice |
Sphinx | External | Passing Juice |
theme | External | Passing Juice |
Read the Docs | External | Passing Juice |
latest | Internal | Passing Juice |
stable | Internal | Passing Juice |
23.1.3 | Internal | Passing Juice |
23.1.2 | Internal | Passing Juice |
23.1.1 | Internal | Passing Juice |
23.1.0 | Internal | Passing Juice |
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22.1.1 | Internal | Passing Juice |
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21.0.4 | Internal | Passing Juice |
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20.2.7 | Internal | Passing Juice |
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1.1.8 | Internal | Passing Juice |
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Project Home | Internal | Passing Juice |
Builds | Internal | Passing Juice |
Keywords Cloud
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Keyword | Content | Website Title | Keywords | Website Description | Headings |
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fmriprep | 33 | ||||
preprocessing | 17 | ||||
january | 17 | ||||
march | 14 | ||||
september | 14 |
Url
Domain : fmriprep.org
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