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Website review Fmriprep.org

 Opdateret den April 28 2024 03:37 AM

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fMRIPrep: A Robust Preprocessing Pipeline for fMRI Data — fmriprep version documentation

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Overskrifter

H1 H2 H3 H4 H5 H6
1 6 1 0 0 0
  • [H1] fMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
  • [H2] About
  • [H2] Principles
  • [H2] Citation
  • [H2] License information
  • [H2] Acknowledgements
  • [H2] Contents
  • [H3] License

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Anker Type Juice
fmriprep Interne Passing Juice
Installation Interne Passing Juice
Usage Notes Interne Passing Juice
Processing pipeline details Interne Passing Juice
Defining standard and nonstandard spaces where data will be resampled Interne Passing Juice
FAQ - Frequently Asked Questions Interne Passing Juice
Developers - API Interne Passing Juice
What’s new Interne Passing Juice
Edit on GitHub eksterne Passing Juice
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www.nipreps.org eksterne Passing Juice
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workflows section of our documentation eksterne Passing Juice
FSL eksterne Passing Juice
ANTs eksterne Passing Juice
FreeSurfer eksterne Passing Juice
AFNI eksterne Passing Juice
https://fmriprep.readthedocs.io/ eksterne Passing Juice
Interne Passing Juice
Interne Passing Juice
NiPreps documentation eksterne Passing Juice
CC0 license eksterne Passing Juice
Esteban et al. (2019) eksterne Passing Juice
preprint eksterne Passing Juice
Esteban et al. (2020) eksterne Passing Juice
preprint eksterne Passing Juice
OHBM 2018 software demonstration eksterne Passing Juice
Abstract eksterne Passing Juice
PDF eksterne Passing Juice
Abstract eksterne Passing Juice
PDF eksterne Passing Juice
Interne Passing Juice
general licensing guidelines eksterne Passing Juice
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http://www.apache.org/licenses/LICENSE-2.0 eksterne Passing Juice
Interne Passing Juice
Interne Passing Juice
Containerized execution (Docker and Singularity) Interne Passing Juice
Manually Prepared Environment (Python 3.10+) Interne Passing Juice
External Dependencies Interne Passing Juice
Not running on a local machine? - Data transfer Interne Passing Juice
Execution and the BIDS format Interne Passing Juice
Command-Line Arguments Interne Passing Juice
Positional Arguments Interne Passing Juice
Options for filtering BIDS queries Interne Passing Juice
Options to handle performance Interne Passing Juice
Options for performing only a subset of the workflow Interne Passing Juice
Workflow configuration Interne Passing Juice
Options for modulating outputs Interne Passing Juice
[DEPRECATED] Options for running ICA_AROMA Interne Passing Juice
Options relating to confounds Interne Passing Juice
Specific options for ANTs registrations Interne Passing Juice
Specific options for handling fieldmaps Interne Passing Juice
Specific options for SyN distortion correction Interne Passing Juice
Specific options for FreeSurfer preprocessing Interne Passing Juice
Options for carbon usage tracking Interne Passing Juice
Other options Interne Passing Juice
The command-line interface of the docker wrapper Interne Passing Juice
Named Arguments Interne Passing Juice
Wrapper options Interne Passing Juice
Developer options Interne Passing Juice
The FreeSurfer license Interne Passing Juice
Reusing precomputed derivatives Interne Passing Juice
BIDS Derivatives reuse Interne Passing Juice
Troubleshooting Interne Passing Juice
License information Interne Passing Juice
Preprocessing of structural MRI Interne Passing Juice
Brain extraction, brain tissue segmentation and spatial normalization Interne Passing Juice
Cost function masking during spatial normalization Interne Passing Juice
Longitudinal processing Interne Passing Juice
Surface preprocessing Interne Passing Juice
Refinement of the brain mask Interne Passing Juice
BOLD preprocessing Interne Passing Juice
BOLD reference image estimation Interne Passing Juice
Head-motion estimation Interne Passing Juice
Slice time correction Interne Passing Juice
Susceptibility Distortion Correction (SDC) Interne Passing Juice
Pre-processed BOLD in native space Interne Passing Juice
EPI to T1w registration Interne Passing Juice
Resampling BOLD runs onto standard spaces Interne Passing Juice
EPI sampled to FreeSurfer surfaces Interne Passing Juice
HCP Grayordinates Interne Passing Juice
Confounds estimation Interne Passing Juice
T2*-driven echo combination Interne Passing Juice
References Interne Passing Juice
Layout Interne Passing Juice
Processing level Interne Passing Juice
Visual Reports Interne Passing Juice
Anatomical derivatives Interne Passing Juice
FreeSurfer derivatives Interne Passing Juice
Functional derivatives Interne Passing Juice
Confounds Interne Passing Juice
Confound regressors description Interne Passing Juice
Confounds and “carpet”-plot on the visual reports Interne Passing Juice
Legacy layout Interne Passing Juice
Standard spaces Interne Passing Juice
Custom standard spaces Interne Passing Juice
Nonstandard spaces Interne Passing Juice
Preprocessing blocks depending on standard templates Interne Passing Juice
What if I find some images have undergone some pre-processing already (e.g., my T1w image is already skull-stripped)? Interne Passing Juice
Running subjects in parallel Interne Passing Juice
Setting up your development environment Interne Passing Juice
Internal configuration system Interne Passing Juice
Configuration sections Interne Passing Juice
Usage Interne Passing Juice
Logging Interne Passing Juice
Other responsibilities Interne Passing Juice
Workflows Interne Passing Juice
fMRIPrep base processing workflows Interne Passing Juice
Pre-processing fMRI - BOLD signal workflows Interne Passing Juice
23.2.1 (March 06, 2024) Interne Passing Juice
23.2.0 (January 10, 2024) Interne Passing Juice
23.1.4 (August 1, 2023) Interne Passing Juice
23.1.3 (June 24, 2023) Interne Passing Juice
23.1.2 (June 16, 2023) Interne Passing Juice
23.1.1 (June 14, 2023) Interne Passing Juice
23.1.0 (June 12, 2023) Interne Passing Juice
23.0.2 (April 24, 2023) Interne Passing Juice
23.0.1 (March 24, 2023) Interne Passing Juice
23.0.0 (March 13, 2023) Interne Passing Juice
22.1.1 (January 04, 2023) Interne Passing Juice
22.1.0 (December 12, 2022) Interne Passing Juice
22.0.2 (September 27, 2022) Interne Passing Juice
22.0.1 (September 13, 2022) Interne Passing Juice
22.0.0 (July 28, 2022) Interne Passing Juice
21.0.4 (September 29, 2022) Interne Passing Juice
21.0.3 (September 6, 2022) Interne Passing Juice
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21.0.0 (December 14, 2021) Interne Passing Juice
20.2.7 (January 24, 2022) Interne Passing Juice
20.2.6 (October 27, 2021) Interne Passing Juice
20.2.5 (October 12, 2021) Interne Passing Juice
20.2.4 (October 04, 2021) Interne Passing Juice
20.2.3 (July 21, 2021) Interne Passing Juice
20.2.2 (July 16, 2021) Interne Passing Juice
20.2.1 (November 06, 2020) Interne Passing Juice
20.2.0 (September 28, 2020) Interne Passing Juice
20.1.4 (July 16, 2021) Interne Passing Juice
20.1.3 (September 15, 2020) Interne Passing Juice
20.1.2 (September 04, 2020) Interne Passing Juice
20.1.1 (June 04, 2020) Interne Passing Juice
20.1.0 (May 27, 2020) Interne Passing Juice
20.0.x series (February 2020) Interne Passing Juice
20.0.7 (May 5, 2020) Interne Passing Juice
20.0.6 (April 16, 2020) Interne Passing Juice
20.0.5 (March 19, 2020) Interne Passing Juice
20.0.4 (March 17, 2020) Interne Passing Juice
20.0.3 (March 12, 2020) Interne Passing Juice
20.0.2 (March 6, 2020) Interne Passing Juice
20.0.1 (February 27, 2020) Interne Passing Juice
20.0.0 (February 24, 2020) Interne Passing Juice
1.5.x series (September 2019) Interne Passing Juice
1.5.10 (April 16, 2020) Interne Passing Juice
1.5.9 (February 14, 2020) Interne Passing Juice
1.5.8 (January 28, 2020) Interne Passing Juice
1.5.7 (January 23, 2020) Interne Passing Juice
1.5.6 (January 22, 2020) Interne Passing Juice
1.5.5 (January 14, 2020) Interne Passing Juice
1.5.4 (December 18, 2019) Interne Passing Juice
1.5.3 (December 12, 2019) Interne Passing Juice
1.5.2 (December 2, 2019) Interne Passing Juice
1.5.1 (November 26, 2019) Interne Passing Juice
1.5.0 (September 9, 2019) Interne Passing Juice
1.4.x series (May 2019) Interne Passing Juice
1.4.1 (July 9, 2019) Interne Passing Juice
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1.3.1 (March 6, 2019) Interne Passing Juice
1.3.0.post3 (March 1, 2019) Interne Passing Juice
1.3.0.post2 (February 14, 2019) Interne Passing Juice
1.3.0.post1 (February 8, 2019) Interne Passing Juice
1.3.0 (February 7, 2019) Interne Passing Juice
1.2.x series (January 2019) Interne Passing Juice
1.2.6-1 (January 24, 2019) Interne Passing Juice
1.2.6 (January 17, 2019) Interne Passing Juice
1.2.5 (December 4, 2018) Interne Passing Juice
1.2.4 (December 3, 2018) Interne Passing Juice
1.2.3 (November 16, 2018) Interne Passing Juice
1.2.2 (November 9, 2018) Interne Passing Juice
1.2.1 (November 1, 2018) Interne Passing Juice
1.2.0 (October 31, 2018) Interne Passing Juice
1.1.x series (October 2018) Interne Passing Juice
1.1.8 (October 4, 2018) Interne Passing Juice
1.1.7 (September 25, 2018) Interne Passing Juice
1.1.6 (September 10, 2018) Interne Passing Juice
1.1.5 (September 06, 2018) Interne Passing Juice
1.1.4 (August 06, 2018) Interne Passing Juice
1.1.3 (July 30, 2018) Interne Passing Juice
1.1.2 (July 6, 2018) Interne Passing Juice
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1.0.15 (May 17, 2018) Interne Passing Juice
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1.0.6 (29th of January 2018) Interne Passing Juice
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1.0.4 (15th of January 2018) Interne Passing Juice
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1.0.0 (6th of December 2017) Interne Passing Juice
1.0.0-rc13 (1st of December 2017) Interne Passing Juice
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1.0.0-rc4 (12th of September 2017) Interne Passing Juice
1.0.0-rc3 (28th of August 2017) Interne Passing Juice
1.0.0-rc2 (12th of August 2017) Interne Passing Juice
1.0.0-rc1 (8th of August 2017) Interne Passing Juice
0.x series (July 2017) Interne Passing Juice
0.6.0 (31st of July 2017) Interne Passing Juice
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0.1.2 (3rd of October 2016) Interne Passing Juice
0.1.1 (30th of July 2016) Interne Passing Juice
0.0.1 Interne Passing Juice
Sphinx eksterne Passing Juice
theme eksterne Passing Juice
Read the Docs eksterne Passing Juice
latest Interne Passing Juice
stable Interne Passing Juice
23.2.1 Interne Passing Juice
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fmriprep 33
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