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fMRIPrep: A Robust Preprocessing Pipeline for fMRI Data — fmriprep version documentation
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| Anchor | Type | Juice |
|---|---|---|
| fmriprep | Internal | Passing Juice |
| Installation | Internal | Passing Juice |
| Usage Notes | Internal | Passing Juice |
| Processing pipeline details | Internal | Passing Juice |
| Defining standard and nonstandard spaces where data will be resampled | Internal | Passing Juice |
| FAQ - Frequently Asked Questions | Internal | Passing Juice |
| Developers - API | Internal | Passing Juice |
| What’s new | Internal | Passing Juice |
| Edit on GitHub | External | Passing Juice |
| | Internal | Passing Juice |
| www.nipreps.org | External | Passing Juice |
| | Internal | Passing Juice |
| workflows section of our documentation | External | Passing Juice |
| FSL | External | Passing Juice |
| ANTs | External | Passing Juice |
| FreeSurfer | External | Passing Juice |
| AFNI | External | Passing Juice |
| https://fmriprep.readthedocs.io/ | External | Passing Juice |
| | Internal | Passing Juice |
| | Internal | Passing Juice |
| NiPreps documentation | External | Passing Juice |
| CC0 license | External | Passing Juice |
| Esteban et al. (2019) | External | Passing Juice |
| preprint | External | Passing Juice |
| Esteban et al. (2020) | External | Passing Juice |
| preprint | External | Passing Juice |
| OHBM 2018 software demonstration | External | Passing Juice |
| Abstract | External | Passing Juice |
| External | Passing Juice | |
| Abstract | External | Passing Juice |
| External | Passing Juice | |
| | Internal | Passing Juice |
| general licensing guidelines | External | Passing Juice |
| | Internal | Passing Juice |
| http://www.apache.org/licenses/LICENSE-2.0 | External | Passing Juice |
| | Internal | Passing Juice |
| | Internal | Passing Juice |
| Containerized execution (Docker and Singularity) | Internal | Passing Juice |
| Manually Prepared Environment (Python 3.10+) | Internal | Passing Juice |
| External Dependencies | Internal | Passing Juice |
| Not running on a local machine? - Data transfer | Internal | Passing Juice |
| Execution and the BIDS format | Internal | Passing Juice |
| Command-Line Arguments | Internal | Passing Juice |
| Positional Arguments | Internal | Passing Juice |
| Options for filtering BIDS queries | Internal | Passing Juice |
| Options to handle performance | Internal | Passing Juice |
| Options for performing only a subset of the workflow | Internal | Passing Juice |
| Workflow configuration | Internal | Passing Juice |
| Options for modulating outputs | Internal | Passing Juice |
| [DEPRECATED] Options for running ICA_AROMA | Internal | Passing Juice |
| Options relating to confounds | Internal | Passing Juice |
| Specific options for ANTs registrations | Internal | Passing Juice |
| Specific options for handling fieldmaps | Internal | Passing Juice |
| Specific options for SyN distortion correction | Internal | Passing Juice |
| Specific options for FreeSurfer preprocessing | Internal | Passing Juice |
| Options for carbon usage tracking | Internal | Passing Juice |
| Other options | Internal | Passing Juice |
| The command-line interface of the docker wrapper | Internal | Passing Juice |
| Named Arguments | Internal | Passing Juice |
| Wrapper options | Internal | Passing Juice |
| Developer options | Internal | Passing Juice |
| The FreeSurfer license | Internal | Passing Juice |
| Reusing precomputed derivatives | Internal | Passing Juice |
| BIDS Derivatives reuse | Internal | Passing Juice |
| Troubleshooting | Internal | Passing Juice |
| License information | Internal | Passing Juice |
| Preprocessing of structural MRI | Internal | Passing Juice |
| Brain extraction, brain tissue segmentation and spatial normalization | Internal | Passing Juice |
| Cost function masking during spatial normalization | Internal | Passing Juice |
| Longitudinal processing | Internal | Passing Juice |
| Surface preprocessing | Internal | Passing Juice |
| Refinement of the brain mask | Internal | Passing Juice |
| BOLD preprocessing | Internal | Passing Juice |
| BOLD reference image estimation | Internal | Passing Juice |
| Head-motion estimation | Internal | Passing Juice |
| Slice time correction | Internal | Passing Juice |
| Susceptibility Distortion Correction (SDC) | Internal | Passing Juice |
| Pre-processed BOLD in native space | Internal | Passing Juice |
| EPI to T1w registration | Internal | Passing Juice |
| Resampling BOLD runs onto standard spaces | Internal | Passing Juice |
| EPI sampled to FreeSurfer surfaces | Internal | Passing Juice |
| HCP Grayordinates | Internal | Passing Juice |
| Confounds estimation | Internal | Passing Juice |
| T2*-driven echo combination | Internal | Passing Juice |
| References | Internal | Passing Juice |
| Layout | Internal | Passing Juice |
| Processing level | Internal | Passing Juice |
| Visual Reports | Internal | Passing Juice |
| Anatomical derivatives | Internal | Passing Juice |
| FreeSurfer derivatives | Internal | Passing Juice |
| Functional derivatives | Internal | Passing Juice |
| Confounds | Internal | Passing Juice |
| Confound regressors description | Internal | Passing Juice |
| Confounds and “carpet”-plot on the visual reports | Internal | Passing Juice |
| Legacy layout | Internal | Passing Juice |
| Standard spaces | Internal | Passing Juice |
| Custom standard spaces | Internal | Passing Juice |
| Nonstandard spaces | Internal | Passing Juice |
| Preprocessing blocks depending on standard templates | Internal | Passing Juice |
| What if I find some images have undergone some pre-processing already (e.g., my T1w image is already skull-stripped)? | Internal | Passing Juice |
| Running subjects in parallel | Internal | Passing Juice |
| Setting up your development environment | Internal | Passing Juice |
| Internal configuration system | Internal | Passing Juice |
| Configuration sections | Internal | Passing Juice |
| Usage | Internal | Passing Juice |
| Logging | Internal | Passing Juice |
| Other responsibilities | Internal | Passing Juice |
| Workflows | Internal | Passing Juice |
| fMRIPrep base processing workflows | Internal | Passing Juice |
| Pre-processing fMRI - BOLD signal workflows | Internal | Passing Juice |
| 23.2.1 (March 06, 2024) | Internal | Passing Juice |
| 23.2.0 (January 10, 2024) | Internal | Passing Juice |
| 23.1.4 (August 1, 2023) | Internal | Passing Juice |
| 23.1.3 (June 24, 2023) | Internal | Passing Juice |
| 23.1.2 (June 16, 2023) | Internal | Passing Juice |
| 23.1.1 (June 14, 2023) | Internal | Passing Juice |
| 23.1.0 (June 12, 2023) | Internal | Passing Juice |
| 23.0.2 (April 24, 2023) | Internal | Passing Juice |
| 23.0.1 (March 24, 2023) | Internal | Passing Juice |
| 23.0.0 (March 13, 2023) | Internal | Passing Juice |
| 22.1.1 (January 04, 2023) | Internal | Passing Juice |
| 22.1.0 (December 12, 2022) | Internal | Passing Juice |
| 22.0.2 (September 27, 2022) | Internal | Passing Juice |
| 22.0.1 (September 13, 2022) | Internal | Passing Juice |
| 22.0.0 (July 28, 2022) | Internal | Passing Juice |
| 21.0.4 (September 29, 2022) | Internal | Passing Juice |
| 21.0.3 (September 6, 2022) | Internal | Passing Juice |
| 21.0.2 (April 21, 2022) | Internal | Passing Juice |
| 21.0.1 (January 24, 2022) | Internal | Passing Juice |
| 21.0.0 (December 14, 2021) | Internal | Passing Juice |
| 20.2.7 (January 24, 2022) | Internal | Passing Juice |
| 20.2.6 (October 27, 2021) | Internal | Passing Juice |
| 20.2.5 (October 12, 2021) | Internal | Passing Juice |
| 20.2.4 (October 04, 2021) | Internal | Passing Juice |
| 20.2.3 (July 21, 2021) | Internal | Passing Juice |
| 20.2.2 (July 16, 2021) | Internal | Passing Juice |
| 20.2.1 (November 06, 2020) | Internal | Passing Juice |
| 20.2.0 (September 28, 2020) | Internal | Passing Juice |
| 20.1.4 (July 16, 2021) | Internal | Passing Juice |
| 20.1.3 (September 15, 2020) | Internal | Passing Juice |
| 20.1.2 (September 04, 2020) | Internal | Passing Juice |
| 20.1.1 (June 04, 2020) | Internal | Passing Juice |
| 20.1.0 (May 27, 2020) | Internal | Passing Juice |
| 20.0.x series (February 2020) | Internal | Passing Juice |
| 20.0.7 (May 5, 2020) | Internal | Passing Juice |
| 20.0.6 (April 16, 2020) | Internal | Passing Juice |
| 20.0.5 (March 19, 2020) | Internal | Passing Juice |
| 20.0.4 (March 17, 2020) | Internal | Passing Juice |
| 20.0.3 (March 12, 2020) | Internal | Passing Juice |
| 20.0.2 (March 6, 2020) | Internal | Passing Juice |
| 20.0.1 (February 27, 2020) | Internal | Passing Juice |
| 20.0.0 (February 24, 2020) | Internal | Passing Juice |
| 1.5.x series (September 2019) | Internal | Passing Juice |
| 1.5.10 (April 16, 2020) | Internal | Passing Juice |
| 1.5.9 (February 14, 2020) | Internal | Passing Juice |
| 1.5.8 (January 28, 2020) | Internal | Passing Juice |
| 1.5.7 (January 23, 2020) | Internal | Passing Juice |
| 1.5.6 (January 22, 2020) | Internal | Passing Juice |
| 1.5.5 (January 14, 2020) | Internal | Passing Juice |
| 1.5.4 (December 18, 2019) | Internal | Passing Juice |
| 1.5.3 (December 12, 2019) | Internal | Passing Juice |
| 1.5.2 (December 2, 2019) | Internal | Passing Juice |
| 1.5.1 (November 26, 2019) | Internal | Passing Juice |
| 1.5.0 (September 9, 2019) | Internal | Passing Juice |
| 1.4.x series (May 2019) | Internal | Passing Juice |
| 1.4.1 (July 9, 2019) | Internal | Passing Juice |
| 1.4.0 (May 15, 2019) | Internal | Passing Juice |
| 1.3.x series (March 2019) | Internal | Passing Juice |
| 1.3.2 (March 18, 2019) | Internal | Passing Juice |
| 1.3.1.post2 (March 13, 2019) | Internal | Passing Juice |
| 1.3.1.post1 (March 11, 2019) | Internal | Passing Juice |
| 1.3.1 (March 6, 2019) | Internal | Passing Juice |
| 1.3.0.post3 (March 1, 2019) | Internal | Passing Juice |
| 1.3.0.post2 (February 14, 2019) | Internal | Passing Juice |
| 1.3.0.post1 (February 8, 2019) | Internal | Passing Juice |
| 1.3.0 (February 7, 2019) | Internal | Passing Juice |
| 1.2.x series (January 2019) | Internal | Passing Juice |
| 1.2.6-1 (January 24, 2019) | Internal | Passing Juice |
| 1.2.6 (January 17, 2019) | Internal | Passing Juice |
| 1.2.5 (December 4, 2018) | Internal | Passing Juice |
| 1.2.4 (December 3, 2018) | Internal | Passing Juice |
| 1.2.3 (November 16, 2018) | Internal | Passing Juice |
| 1.2.2 (November 9, 2018) | Internal | Passing Juice |
| 1.2.1 (November 1, 2018) | Internal | Passing Juice |
| 1.2.0 (October 31, 2018) | Internal | Passing Juice |
| 1.1.x series (October 2018) | Internal | Passing Juice |
| 1.1.8 (October 4, 2018) | Internal | Passing Juice |
| 1.1.7 (September 25, 2018) | Internal | Passing Juice |
| 1.1.6 (September 10, 2018) | Internal | Passing Juice |
| 1.1.5 (September 06, 2018) | Internal | Passing Juice |
| 1.1.4 (August 06, 2018) | Internal | Passing Juice |
| 1.1.3 (July 30, 2018) | Internal | Passing Juice |
| 1.1.2 (July 6, 2018) | Internal | Passing Juice |
| 1.1.1 (June 7, 2018) | Internal | Passing Juice |
| 1.1.0 (June 4, 2018) | Internal | Passing Juice |
| 1.0.x series (May 2018) | Internal | Passing Juice |
| 1.0.15 (May 17, 2018) | Internal | Passing Juice |
| 1.0.14 (May 15, 2018) | Internal | Passing Juice |
| 1.0.13 (May 11, 2018) | Internal | Passing Juice |
| 1.0.12 (May 03, 2018) | Internal | Passing Juice |
| 1.0.11 (April 16, 2018) | Internal | Passing Juice |
| 1.0.10 (April 16, 2018) | Internal | Passing Juice |
| 1.0.9 (April 10, 2018) | Internal | Passing Juice |
| 1.0.8 (February 22, 2018) | Internal | Passing Juice |
| 1.0.7 (February 13, 2018) | Internal | Passing Juice |
| 1.0.6 (29th of January 2018) | Internal | Passing Juice |
| 1.0.5 (21st of January 2018) | Internal | Passing Juice |
| 1.0.4 (15th of January 2018) | Internal | Passing Juice |
| 1.0.3 (3rd of January 2018) | Internal | Passing Juice |
| 1.0.2 (2nd of January 2018) | Internal | Passing Juice |
| 1.0.1 (1st of January 2018) | Internal | Passing Juice |
| 1.0.0 (6th of December 2017) | Internal | Passing Juice |
| 1.0.0-rc13 (1st of December 2017) | Internal | Passing Juice |
| 1.0.0-rc12 (29th of November 2017) | Internal | Passing Juice |
| 1.0.0-rc11 (24th of November 2017) | Internal | Passing Juice |
| 1.0.0-rc10 (9th of November 2017) | Internal | Passing Juice |
| 1.0.0-rc9 (2nd of November 2017) | Internal | Passing Juice |
| 1.0.0-rc8 (27th of October 2017) | Internal | Passing Juice |
| 1.0.0-rc7 (20th of October 2017) | Internal | Passing Juice |
| 1.0.0-rc6 (11th of October 2017) | Internal | Passing Juice |
| 1.0.0-rc5 (25th of September 2017) | Internal | Passing Juice |
| 1.0.0-rc4 (12th of September 2017) | Internal | Passing Juice |
| 1.0.0-rc3 (28th of August 2017) | Internal | Passing Juice |
| 1.0.0-rc2 (12th of August 2017) | Internal | Passing Juice |
| 1.0.0-rc1 (8th of August 2017) | Internal | Passing Juice |
| 0.x series (July 2017) | Internal | Passing Juice |
| 0.6.0 (31st of July 2017) | Internal | Passing Juice |
| 0.5.4 (20th of July 2017) | Internal | Passing Juice |
| 0.5.3 (18th of July 2017) | Internal | Passing Juice |
| 0.5.2 (30th of June 2017) | Internal | Passing Juice |
| 0.5.1 (24th of June 2017) | Internal | Passing Juice |
| 0.5.0 (21st of June 2017) | Internal | Passing Juice |
| 0.4.6 (14th of June 2017) | Internal | Passing Juice |
| 0.4.5 (12th of June 2017) | Internal | Passing Juice |
| 0.4.4 (20th of May 2017) | Internal | Passing Juice |
| 0.4.3 (10th of May 2017) | Internal | Passing Juice |
| 0.4.2 (3rd of May 2017) | Internal | Passing Juice |
| 0.4.1 (20th of April 2017) | Internal | Passing Juice |
| 0.4.0 (20th of April 2017) | Internal | Passing Juice |
| 0.3.2 (7th of April 2017) | Internal | Passing Juice |
| 0.3.1 (24th of March 2017) | Internal | Passing Juice |
| 0.3.0 (20th of March 2017) | Internal | Passing Juice |
| 0.2.0 (13th of January 2017) | Internal | Passing Juice |
| 0.1.2 (3rd of October 2016) | Internal | Passing Juice |
| 0.1.1 (30th of July 2016) | Internal | Passing Juice |
| 0.0.1 | Internal | Passing Juice |
| Sphinx | External | Passing Juice |
| theme | External | Passing Juice |
| Read the Docs | External | Passing Juice |
| latest | Internal | Passing Juice |
| stable | Internal | Passing Juice |
| 23.2.1 | Internal | Passing Juice |
| 23.2.0 | Internal | Passing Juice |
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| 1.5.9 | Internal | Passing Juice |
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Keywords Cloud
march options july january preprocessing june september fmriprep license data
Keywords Consistency
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| fmriprep | 33 |  |
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| preprocessing | 17 | |
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Url
Domain : fmriprep.org
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